Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., integrase from Escherichia coli BL21

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 34  VSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDP--RKSTRS 91
           V P     W  R  I GK + + LG YP + L +A   R+   +L+  G DP  +K  + 
Sbjct: 5   VHPNSSRYWRLRYRILGKEKTLALGVYPEVSLSEARAKRDEARKLISAGIDPCEQKRAKK 64

Query: 92  ANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVF 151
              D  ++   +   W  ++ +      D +LK   T + P +GN    +L   D +   
Sbjct: 65  VVPDLQLSFEHIARRWHASNKQWTQSHSDKVLKSLETHVFPFIGNRDITKLNTPDLLIPV 124

Query: 152 LKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQG 211
             A+ +   + ++ L  R   V+ YAV+ G+++YN   ++     G  TT KR  +    
Sbjct: 125 RAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDM----AGALTTVKRQHRPALD 180

Query: 212 VKALWKAIDDISIHES---NKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEE 265
           +  L + +  I  ++     +  + L L+   RS+ELR A+ ++ D+E  +WT+P E
Sbjct: 181 LSRLPELLSRIGSYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIENAMWTIPAE 237