Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Putative prophage CPS-53 integrase from Alteromonas macleodii MIT1002

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 84/370 (22%), Positives = 150/370 (40%), Gaps = 28/370 (7%)

Query: 15  GKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARES 74
           GKP    ++ S   GL   V  +G+  W  R ++NGK +   LG+   + L +A    E 
Sbjct: 15  GKP----SKTSDGNGLSFVVPNRGEPYWSLRYSVNGKRREKSLGKARQVTLAEARGLAEE 70

Query: 75  RAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENH----ARDNIKQCDALLKMFHTDI 130
               +  G DP  S  + +  +I ++++L + + +N        NI +     + +  DI
Sbjct: 71  ERTKLREGLDPL-SKFAGSVLNIRSMDELFNDYYQNKLLRLVHPNIPK-----RKYQNDI 124

Query: 131 TPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTE 190
           +P +GN     +  I    +            S +++     +  +A + GL   N  + 
Sbjct: 125 SPYIGNMDVSNITPIHVRNIIRSIAESERPSVSNDVLDLLNNLFKHATQLGLTLNNPASV 184

Query: 191 LKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLR--LMLIFANRSNELRLA 248
               D G    P+      + +K +++         +  N+L   L+L+   R NEL  A
Sbjct: 185 FSYMDAGGQEKPRTRYLTLEEIKPIYEIFRQHPESFTRDNYLACCLLLVLGVRKNELLQA 244

Query: 249 KKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHTMMFPPVNT 308
             A+FDL   VW +P+  N+ +KK  G I   +PP+A + + E          +FP    
Sbjct: 245 PWAEFDLTNAVWHLPK--NRTKKKYKG-IDIPLPPIALEWLQELKVRGAGSDYVFPARRR 301

Query: 309 EQ---------DRPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARNIWESMGVPYH 359
            +         +R +     +  G K+            T HD+RRT R++   +G    
Sbjct: 302 SKKPYMGSDTLNRAIDGLFGIAQGKKIPPPNRMDDIEHFTVHDLRRTFRSLVPKLGFSSE 361

Query: 360 VAETMLGHKV 369
           + E  L HK+
Sbjct: 362 LGERCLNHKI 371