Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 91/381 (23%), Positives = 157/381 (41%), Gaps = 28/381 (7%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TD  +R    KP   K   S   G+ + V+P G + W  +   NGK     +G YP   
Sbjct: 2   LTDVKVRKL--KPLEKKARYSDEKGMYLEVTPSGGMYWRMKFRFNGKENIFSIGTYPETS 59

Query: 65  LRDAIQARESRAELVELGFDPR--KSTRSANDDSIITLNDLIDYWAENHARDNIKQCDAL 122
           L  A + R+     ++ G +P   K  +    D  +    L   W E+  +  IK+   L
Sbjct: 60  LAQARRIRDEARLKLKDGINPNEAKKQKKQQADENMLFKALAMEWMEDR-KAVIKENTYL 118

Query: 123 --LKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRH 180
             L +F  D+ PTLGN P  Q+   D +    K + R + + +   +    ++  +A+R 
Sbjct: 119 RDLSVFEKDLFPTLGNMPIDQIRGKDVLACAKKIEERGAQEMAKRSIPLAGRIFRFAIRK 178

Query: 181 GLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFAN 240
           GL++ +    L++A +        +R D        + +D    +   K  ++LM +   
Sbjct: 179 GLIENDPTPHLQEA-LKPRKVKHMARLDISEFPPFLERMDRYHGNPMIKTAIQLMTLTFV 237

Query: 241 RSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWP--- 297
           R+ ELR+ + ++ D +  +W +P E  K+ +         I PL+++ I     + P   
Sbjct: 238 RTAELRMMEWSEIDFDTHLWRIPAEKMKMAQPH-------IVPLSKQAIALIEGLRPLTG 290

Query: 298 NHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGF-PRTTNHDMRRTARNIWESMGV 356
           N   +F   N    +PMS+N        L   I  +G+  + T H  R  A       G 
Sbjct: 291 NKQYVF--YNHSTAKPMSSNA-------LLCVIRTMGYNGKMTGHGFRGLASTTLHEQGY 341

Query: 357 PYHVAETMLGHKVHTGVQSHY 377
            +   E  L H+V   V   Y
Sbjct: 342 MHDAIEIQLAHRVGNAVSQAY 362