Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 87/380 (22%), Positives = 154/380 (40%), Gaps = 42/380 (11%)

Query: 10  LRATNGKPYSGKTEISHRFGLGVRVSPKGKITWV--YRANINGKMQRIKLGEYPAMKLRD 67
           +++ N         +S   GL + +   G + W   Y   ++ K   + +G YPAM L  
Sbjct: 20  IKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPVSKKRNTMTVGNYPAMSLAK 79

Query: 68  AIQARESRAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENH------ARDNIKQCDA 121
           A + R+    L+  G DP+   +   +   +         AE +      A   +K+ D 
Sbjct: 80  AREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVAELYKSKQRLAEATVKRNDG 139

Query: 122 LLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHG 181
           + +  + D+    GN P   +   D   V  K + +   + +  + ++  QV  +AV+ G
Sbjct: 140 IFEKLYRDV----GNMPISDITPRDLAKVIEKDENKGHIESAMRIRSKASQVFRFAVKMG 195

Query: 182 LLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAID------DISIHESNKNFLRLM 235
           L + +V  +L     G  T     ++++    AL    D      DI  +ES    ++L 
Sbjct: 196 LCERDVAQDL----AGTIT-----QREKNHYSALTDPFDFACLLFDIDHYESQLVHVKLA 246

Query: 236 LIFAN----RSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKI-IM 290
           L  A     R  ELR AK +D + E   W+     +K   K G  +   +P   + I I+
Sbjct: 247 LQLAPLVFVRIGELRNAKWSDINFETATWSYTP--SKTSAKTG--LDHIVPLSTQAIAIL 302

Query: 291 EQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARNI 350
           ++   + N++    P  +++ RP+S     D    +A R    G    T H  R  AR +
Sbjct: 303 KEALNFTNNSDFVFPSRSDKHRPIS-----DMSINMALRRMGYGKEDMTGHGFRAIARTL 357

Query: 351 W-ESMGVPYHVAETMLGHKV 369
             E +  P  + E  L H+V
Sbjct: 358 LDEVLEFPLDIIEQQLAHQV 377