Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 72/364 (19%), Positives = 145/364 (39%), Gaps = 32/364 (8%)

Query: 24  ISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGF 83
           ++   GL + V   G   W YR       + + +G YP + L  A         ++    
Sbjct: 19  VADHAGLCLEVRTTGSKFWRYRYRYLNIPKMLTIGPYPEISLSYARDKTREYRGMLAKNL 78

Query: 84  DPRKSTRSANDDSIITL--------NDLIDYWAENHARDNIKQCDALLKMFHTDITPTLG 135
           DP    + A D ++  +        N+ ++ + + H+++  +     L+ F  DI P +G
Sbjct: 79  DPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWYEN---RLRYFKKDINPVIG 135

Query: 136 NYPAKQLELIDFMPVFLKAKRRV--SAKHSANLMTRF-KQVLSYAVRHGLLKYNVLTE-- 190
           N P K++   D   +      R+  S + +  +   + +Q+ +  +++ ++   ++ +  
Sbjct: 136 NKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICAEVMQYAIITLKIINDPT 195

Query: 191 -LKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAK 249
              ++ +  P     +  +E+  K +   I+        +N LR  L    R+ E+R AK
Sbjct: 196 IALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQNALRTALYSMLRTIEIRRAK 255

Query: 250 KADFDLEKRVWTVPEENN---KVRKKQGGAIRRAIPPLAE---KIIMEQFAIWPNHTMMF 303
           K+  +L+    T+P  +N   K  K+     R  + PL+    +II EQ  ++P+   +F
Sbjct: 256 KSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQMLEIIKEQLQLYPDSIYLF 315

Query: 304 PPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARNIWESMGVPYHVAET 363
           P             + +   + L + +  +G    T HD R TA              E 
Sbjct: 316 PG---------DDGISMLGKNTLNEALVNMGLGHITMHDFRATASTYLNEQNYSKDWIEL 366

Query: 364 MLGH 367
            L H
Sbjct: 367 QLAH 370