Pairwise Alignments

Query, 389 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., D-alanyl-D-alanine endopeptidase from Pseudomonas simiae WCS417

 Score = 74.3 bits (181), Expect = 4e-18
 Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 32/286 (11%)

Query: 8   VRFSMACMAFVPTLGFSALTVVPEPP------QLAANGYVLIDFHTGKVLVEHNAHQKLN 61
           +R S+  + F  T  F+      + P      Q+A+   +L+D  T KV+   N    + 
Sbjct: 3   IRLSLVSLLFAFTGTFAHAAETTQAPRDTSKLQIASGSAMLVDLQTNKVIYSSNPDVVVP 62

Query: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMF--IEVGTYVNLMDL 119
            AS++KLMT  V  +  +  + + D  +        K  P+   +F  +++G+ +   ++
Sbjct: 63  IASVSKLMTGLVVLEAKQNMDEYIDINI--------KDTPEMKGVFSRVKIGSEMPRKEM 114

Query: 120 YRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTP 179
               ++ S N A+ ++A H  G   AF++ MN+ A+ LGM ++ +  P GL    + ST 
Sbjct: 115 LLIALMSSENRAAASLAHHYPGGYPAFIAAMNAKAKALGMTSTHYVEPTGLSIHNV-STA 173

Query: 180 YDIALLGRAIIRDLPEIYPLYSELSFTYNGITQ----------HNRNGLLRDRSMNVDGM 229
            D++ L  A        YPL S+LS T                 N + L+   + ++   
Sbjct: 174 RDLSKLLAA-----ARHYPLLSQLSTTKEKTVSFRKPNYTLGFSNTDHLINRANWDIKLT 228

Query: 230 KTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSY 275
           KTG+T+ AG+ L      G   +  V++ +    +  A++ ++ ++
Sbjct: 229 KTGFTNQAGHCLVLVTNMGNRPVSLVILDAFGKFTHFADASRIRNW 274