Pairwise Alignments

Query, 389 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) from Escherichia coli BW25113

 Score =  351 bits (901), Expect = e-101
 Identities = 185/392 (47%), Positives = 255/392 (65%), Gaps = 7/392 (1%)

Query: 5   KFLVRFSMACMAFVPTLGFSAL---TVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLN 61
           K L   +  C AF+       L   T++P  PQ+ A  Y+LID+++GKVL E NA  + +
Sbjct: 11  KRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRD 70

Query: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKK---FPDSSKMFIEVGTYVNLMD 118
           PASLTK+MTSYV GQ MK G     D V I N+AWA     F  SS MF++ G  V +  
Sbjct: 71  PASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQ 130

Query: 119 LYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYST 178
           L RG+ +QSGNDA VA+A+  AGS+ AFV LMNS+   LG+ N+ F   HGLD    YS+
Sbjct: 131 LIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSS 190

Query: 179 PYDIALLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAG 238
             D+AL+G+A+IRD+P  Y +Y E  FT+NGI Q NRNGLL D S+NVDG+KTG+T  AG
Sbjct: 191 ARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAG 250

Query: 239 YSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLW 298
           Y+L +SAT G+MRLIS VMG ++ K REAESK+LL++GFRF+ETV P +      ++ +W
Sbjct: 251 YNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVW 310

Query: 299 YGDKNEVALGSADTVYLTLPRSDVKKLNAVIQLDQN-LEAPIAKGDVVGSIFYYIDEEKV 357
           +GD +  +LG    VYLT+PR  +K L A   L+ + L AP+ K  VVG+I + +D + +
Sbjct: 311 FGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTI 370

Query: 358 GEAKLVSQESVEQGGIFKRLMDWFKLLFSGWF 389
            +  LV  + + +G  F +++D+ KL+F  WF
Sbjct: 371 EQRPLVVLQEIPEGNFFGKIIDYIKLMFHHWF 402