Pairwise Alignments

Query, 389 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., penicillin-binding protein from Agrobacterium fabrum C58

 Score =  138 bits (348), Expect = 3e-37
 Identities = 93/269 (34%), Positives = 142/269 (52%), Gaps = 12/269 (4%)

Query: 8   VRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTK 67
           VRF    +A       S  T   +P        ++ID  +GKVL   +      PASLTK
Sbjct: 26  VRFVALTLAAAFIAATSVQTAKADPKYAG----IVIDAKSGKVLYGEDPDGLRYPASLTK 81

Query: 68  LMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQS 127
           +MT Y+  + +  G I  D +V +S NA AK+ P  SK+ +  G  V +      L+ +S
Sbjct: 82  MMTLYLTFEALNSGRISLDSRVTVSANA-AKEPP--SKLGVRAGGSVTVEQAILALVTRS 138

Query: 128 GNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALLGR 187
            ND + A+ EH+ GSE  F  +M + A+ LGM  +++ N +GL N A  +T  D A LG 
Sbjct: 139 ANDMATALGEHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGI 198

Query: 188 AIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245
           A+ +  P+ Y  +S  +F +    I  HNR   L      VDG+KTGYT  AG +LA+SA
Sbjct: 199 ALRQHFPQYYGYFSTRTFNFGKQVIGNHNR---LVGTVKGVDGIKTGYTRAAGSNLATSA 255

Query: 246 TSGEMRLISVVMGSKSVKSREAESKQLLS 274
                 +++VV+G +S  +R+A  ++L++
Sbjct: 256 QLDGRSIVAVVLGGRSSAARDATMRKLVA 284