Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  231 bits (590), Expect = 6e-65
 Identities = 159/526 (30%), Positives = 267/526 (50%), Gaps = 22/526 (4%)

Query: 136 WYQQAKSRRSPFLTEIYQDQVTGKKVISAVS--PILHQGQFVGALLGDFQLDDI--ITQV 191
           WY   +  R   L + Y D+V GK+++      P++  G  +G +  D  L+ +  +T  
Sbjct: 190 WYTCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLMVDGNVIGVVGIDIALNTLQAVTDA 249

Query: 192 SNMRFAGGAA---TLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQESGHLSFP 248
           +      GAA    L+    +  +S  P  +G+T      +  +        +S  +   
Sbjct: 250 AQKELFNGAAHLDILSSTGLIAASSGQPEIVGKTLMDTVGAEGKEIVQLLASDSPMIREQ 309

Query: 249 YLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALAD-------VDVAVANAITTGIVLIGI 301
              I     Y    + D   W ++V + +   LAD       +D A A A T   +L+G 
Sbjct: 310 DHTIR--AVYPVKPIADAKSWGVVVTLPRNVMLADTLKLQDVLDKAQA-AGTLKALLVGA 366

Query: 302 SVGVIIFII-----NQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRF 356
           +  ++  ++       + +P+  +   + D+A G GDLT+RL     D+L +++  FNRF
Sbjct: 367 AAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELANWFNRF 426

Query: 357 SGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTV 416
              LQ  + QI  +      + +Q S  A++  + +     E DQV TA  +MS +A  V
Sbjct: 427 LDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSATAHDV 486

Query: 417 AESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVL 476
           A S + +      A + A++ + I+  +   +TSL  +V      +  +  ++ +I  VL
Sbjct: 487 ANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIGSVL 546

Query: 477 SVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLL 536
            VI +I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ+S  EI  ++ ++ 
Sbjct: 547 EVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIERIQ 606

Query: 537 EGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAA 596
            GT  VV  M  ++ Q Q+ A +  + + +L  +S +V+ I D++ QIA+A EQQS VA 
Sbjct: 607 SGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSAVAE 666

Query: 597 ELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
           E++RN+ +IR + E+L     ++   +  L+    +  +L+ +F++
Sbjct: 667 EVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712