Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  229 bits (583), Expect = 4e-64
 Identities = 168/648 (25%), Positives = 292/648 (45%), Gaps = 35/648 (5%)

Query: 8   MTLGFKGRIYASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVK 67
           M L F  +I  +   +V ++  +    N    +  +  +L +  Q       S ++ W+ 
Sbjct: 1   MNLKFSHKILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLS 60

Query: 68  SRY--------EAVSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSMD 119
            R             +G+    P L D              Q   V     D +     D
Sbjct: 61  GRILVLESLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVGQTNGVFTQRPDAKMPDGYD 120

Query: 120 KEGGVTTNRFKFTDRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALL 179
                         R WY+QA +   P LT  Y   V G+ +++   P+   G+ +G + 
Sbjct: 121 PR-----------QRPWYKQAVAADKPMLTPPYMAAVGGQ-IVTIAMPVKKNGELLGVVG 168

Query: 180 GDFQLDDIITQVSNMRFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFH 238
           GD  L  ++  ++++ F G G A L   +     S + + + +    + P  +       
Sbjct: 169 GDLSLQTLVKIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQV------ 222

Query: 239 RQESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVL 298
           R E         G +    +  ++      W + + +DK  A A +     +A+   ++ 
Sbjct: 223 RIEKVSQDVVLNGQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIA 282

Query: 299 IGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSG 358
           +     ++  +I  + +PL  + VA+ D+AQG GDLTRRL V   D+  ++   FN+F  
Sbjct: 283 VVAIAVLLSLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVE 342

Query: 359 NLQNMMLQISDATQIISSSIEQLSQT--AKENEQMLIS--HSSETDQVVTAITQMSESAR 414
            +   + ++S AT+     +  LSQ   A  N  ++ S   S+ T+ V  AI ++  + +
Sbjct: 343 RIHASISEVSSATR----QVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQ 398

Query: 415 TVAESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISE 474
            +A +   ++Q    AS++A     +V   +  ++ L   +      I  +N   + I  
Sbjct: 399 EIARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGH 458

Query: 475 VLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTK 534
           +L VI  IS+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ S  EI  M+T 
Sbjct: 459 ILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITS 518

Query: 535 LLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTV 594
           L  G+   V  M  ++   + + +  ++    L  ++  + +ID ++  +AAATE+Q+ V
Sbjct: 519 LQVGSREAVTTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAV 578

Query: 595 AAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642
              L+ ++  I  + +  V +  +T+   ++LS   + L+QLV  FK+
Sbjct: 579 VETLNVDINQINLLNQQGVANLNETLKDCDALSQQANRLKQLVDSFKI 626