Pairwise Alignments

Query, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  235 bits (600), Expect = 4e-66
 Identities = 174/657 (26%), Positives = 328/657 (49%), Gaps = 65/657 (9%)

Query: 8   MTLGFKGRIY--ASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFW 65
           M +GF  ++   +S ++LVT++ +V       + K+E+    +   ++ +N  +++ E +
Sbjct: 1   MNVGFVKKLIFISSFILLVTVAFVVWE--GYTTAKKEV----SVVIEDGINEIINKTERF 54

Query: 66  VKSRYEAVSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMS----MDKE 121
           V  + E+    A+     +S          +++   I ++I      ++++S     D  
Sbjct: 55  VSLKLESDISLASSIVDSIS--------LRISDEQYINDIINGNAIKKAFLSTGFGFDSN 106

Query: 122 GGVTTNRFKFTDRD--------WYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILH-QG 172
           G V  N   +   D        WYQ+AK  +  F+TE Y D      ++S  SP+     
Sbjct: 107 GKVIENDPNWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMN 166

Query: 173 QFVGALLGDFQLDDIITQVSNMR-FAGGAATLTDKNAVFFASDDPNDIGRTPSQVSPSFR 231
            F+GA+  D  L  I   V ++  F  G   +T          + +++G+    +   FR
Sbjct: 167 NFIGAMYFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIYNGFR 226

Query: 232 EMEAGFHRQESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANA 291
                    + G +     G+    Y   +   D   W ++  +D++ A+  ++      
Sbjct: 227 --------LDKGKVVLSVNGVNKWLYTSPILGGD---WFIIAVIDESIAMQSINKMKYEL 275

Query: 292 I---TTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQ 348
           I     G+V  G+   +++FI+ ++  PL  L  A+ D+A G GDLT++L+ N + + ++
Sbjct: 276 IFYSAIGLVFGGL---ILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSE 332

Query: 349 ISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQ 408
           ++ GFN F+  L + + Q+      +    E+ +  A+ +  ++     E +Q+ TA+ +
Sbjct: 333 LALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNE 392

Query: 409 MSESARTVAESVTQSNQITEAASKEAQQSLV----IVNNAVSTVTSLVNDVENMSESISN 464
           M+ +A  VA S     Q+   A+KE + + +    +V+     +  L   + +  E +  
Sbjct: 393 MAMTASEVANSA----QVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKE 448

Query: 465 MNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNS 524
           + +  ++I  VL VI  I++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ S
Sbjct: 449 LVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQS 508

Query: 525 TTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQI 584
           T +IS+++ +L EG  +V  +M+ +K +     +KT++V+  ++++  ++  I D++ QI
Sbjct: 509 TMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQI 568

Query: 585 AAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFK 641
           A+A E+QS VA E++ N ++I+++          ++  +E+ S++  E+   V K K
Sbjct: 569 ASAAEEQSLVAEEINNNTVNIKDL----------SIKLSEAASNAGTEMNAQVSKVK 615



 Score = 58.9 bits (141), Expect = 7e-13
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 287 AVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDL 346
           +V +  T  I  + I +G  +  + ++ K   R++  VLD+     D T  L +N   + 
Sbjct: 423 SVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIET-VLDVINDIADQTNLLALNAAIEA 481

Query: 347 AQISE---GFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVV 403
           A+  E   GF   +  ++ +  +   +T  IS  IEQL + AK   + +     ETD VV
Sbjct: 482 ARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVV 541

Query: 404 TAITQMSESARTVAESVTQ-SNQITEAASKEAQQSLV---IVNNAVSTVTSLVNDVENMS 459
               Q++E    V +++ + S+   + AS   +QSLV   I NN V+     +   E  S
Sbjct: 542 EKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAAS 601

Query: 460 ESISNMNRDANKISE 474
            + + MN   +K+ E
Sbjct: 602 NAGTEMNAQVSKVKE 616