Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., multidrug effflux MFS transporter from Pseudomonas fluorescens SBW25

 Score =  127 bits (320), Expect = 4e-34
 Identities = 101/366 (27%), Positives = 177/366 (48%), Gaps = 14/366 (3%)

Query: 16  FPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGRRPTMLV 75
           F  +    Y P   ++A +F+  +     TL+VYF   A+G +I+G LAD++GRR  +L 
Sbjct: 15  FAPLAIDFYLPGFPAMATAFATDEKHIQLTLAVYFAGLAIGQLIYGPLADRFGRRGPLLS 74

Query: 76  GLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRKVFSLMG 135
           G+ ++  A+F      S   L+ AR   A G   G V+++ ++ D        KV+S + 
Sbjct: 75  GVTLFTLASFACAFAPSLEWLIAARFVQALGGCAGMVISRAVVSDKCDPVGSAKVYSQLM 134

Query: 136 IGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQQV-KPKIALGC 194
           +   ++P+L  L GG +    G Q +FLAL   +++  +     LPET    +P+  L  
Sbjct: 135 LVTGLAPILAPLAGGLMVGVWGWQSIFLALSLFSVMAAIAVAVGLPETFPAHQPRQPLSG 194

Query: 195 LVAR---MFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDL-GLDAEQFGYSGIALGLG 250
            + R   +  DR  L  AL   +    +F+Y     F+F  L G+ AE +G+   +   G
Sbjct: 195 SLRRYGALLSDRVYLGYALTGGISIAGMFAYIAGSPFVFIKLYGVPAEHYGWLFGSNAAG 254

Query: 251 SLIGSFLNKTLLAKQVPQRAL-----LLLAALLLIMGTIGVSLTLDSI-GFVAAMILVVI 304
            ++ + +N  LLAK+ P   L     + L A L ++G    +L  D++   +  + + + 
Sbjct: 255 FILVAQVNARLLAKRGPAFLLSRTVWVYLLAALTLLGI--AALRTDALWPLLVPLFICIA 312

Query: 305 AYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQRLGVVLLMCAGIT 364
           + G  +PN  + A+    ++AGSA AL G + + +     +L G++   G  + M   I+
Sbjct: 313 SLGCILPNTSACAMSGQGARAGSASALLGCIQFGVAAGAASLVGVLHD-GTAMPMAMVIS 371

Query: 365 LLATLA 370
           L   LA
Sbjct: 372 LCGVLA 377