Pairwise Alignments

Query, 379 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., 2-module integral membrane pump; multidrug resistance (VIMSS) from Escherichia coli BW25113

 Score =  119 bits (298), Expect = 1e-31
 Identities = 98/356 (27%), Positives = 163/356 (45%), Gaps = 12/356 (3%)

Query: 7   LWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADK 66
           L ++V+++   Q+ +TIY P +  +AR  +V +      +  Y L + +  + +G ++D+
Sbjct: 10  LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR 69

Query: 67  WGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHE 126
            GRRP +LVG+ I+  AT +A+ T S T+L+ A      G  VG V+ +T+ RD++   +
Sbjct: 70  VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 129

Query: 127 LRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQLPETQQV 186
           LR   SL+ +GI +SP+L  L+GG L      +  +L L  +   +       +PET+ V
Sbjct: 130 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 189

Query: 187 -KPKIALGCLVARMFKDR--QVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQFGYS 243
             P+  L      +F +      L  L+  L  +A F     G  + + LGL +      
Sbjct: 190 DAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS-GVLMGAVLGLSSMTVSIL 248

Query: 244 GI----ALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLL-IMGTIGVSLTLDSIGFVAA 298
            I    A   G+      NK             LLA LL+ I    GV   ++    +  
Sbjct: 249 FILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGV---MNVWTLLVP 305

Query: 299 MILVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQRLG 354
             L     GM  P   S A+  +   AG+AGAL G L  +  G   +L+ ++ + G
Sbjct: 306 AALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 361