Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 4/223 (1%)

Query: 34  HQHQKGQLLFAPQGCIRFALDDSICILPPTKAVWIPSGTRHRAIMTNVVAYRSIYF-DCH 92
           H H  GQLL+A  G +         ++PP +AVW+P G  H   + + +  R+IY     
Sbjct: 32  HSHDWGQLLYAMSGVMWVETPREALVVPPQRAVWLPPGVAHGIRVVSDLQMRNIYLRPAL 91

Query: 93  AFKCPDHITMIEVNALLKALIDKMALWSWDTPQESMNNTTTLFWEEFYAAQRQTFHLPLP 152
           A      + +IEV  LL+ LI  +            +   +L   E   A+R    + +P
Sbjct: 92  AATLDSQVQVIEVGGLLRELIVTLVEEGDSGEAAYYDAVVSLALLELQRARRSQIRIAMP 151

Query: 153 T--NRRFKVFRKQLMQATFFAPDLVSLANSVGASSKTVTRLFKAETGMSYQEWKQQWRLL 210
              +RR     + +M A          A + GAS +T++RLF+   GM + EW++Q +L 
Sbjct: 152 VGVDRRLITACQAIMAAPSLEVAFEHHAETAGASVRTLSRLFQNNLGMGFAEWRRQVQLA 211

Query: 211 KAIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTGQTPLSFI 253
            A+  L +   V+ ++  LG+ S S+F   F+++ G  P  ++
Sbjct: 212 TAVAELIQGQSVSAIARSLGY-SPSSFSDMFRRELGVAPSHYV 253