Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  103 bits (258), Expect = 3e-27
 Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 34  HQHQKGQLLFAPQGCIRFALDDSICILPPTKAVWIPSGTRHRAIMTNVVAYRSIYFDCHA 93
           HQH   Q  +A  G +     D     PP   VWIP+   H  + +     RS+Y    A
Sbjct: 36  HQHDWVQFSYAISGVLGVYTRDGSYFAPPQWGVWIPADAEHEVVTSMQAEMRSLYVRRDA 95

Query: 94  FK-CPDHITMIEVNALLKALIDKMALWSWDTPQESMNNT--TTLFWEEFYAAQRQTFHLP 150
               P+   ++EV  L + LI +  L+  D P++         +  ++  +     F LP
Sbjct: 96  CPWAPEQCRVLEVTPLARELIKQFCLFPADYPEDDSAEARLVAVLLDQLRSLPEVGFSLP 155

Query: 151 LPTNRRFKVFRKQLMQATFFAPDLVSLANSVGASSKTVTRLFKAETGMSYQEWKQQWRLL 210
           LP +         L+ A      L   A  +G S KT+ RLF+ ETG+S++ W+Q+ RLL
Sbjct: 156 LPRHPGLLALCNGLIAAPDQPQTLQQWARELGCSEKTLMRLFQRETGLSFRNWRQRMRLL 215

Query: 211 KAIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTGQTP 249
            ++ LL     V + +   G+ S SA+IA FK+  G TP
Sbjct: 216 SSLALLEAGENVTEAALGCGYDSTSAYIAAFKQLFGATP 254