Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., helix-turn-helix domain-containing protein from Pseudomonas sp. SVBP6

 Score =  108 bits (271), Expect = 9e-29
 Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 5/246 (2%)

Query: 15  LPACVVGIAADIGNHDSGL-HQHQKGQLLFAPQGCIRFALDDSICILPPTKAVWIPSGTR 73
           LP  V G    + N   G  H H  GQL +A +G +    D    ++PP +AVW+P+  +
Sbjct: 21  LPRPVYGHVQALPNVVLGYRHAHPWGQLSYAIRGVLEVHSDQGFYLVPPQRAVWVPAQVQ 80

Query: 74  HRAIMTNVVAYRSIYFDCHAFKCPD-HITMIEVNALLKALIDKMALW--SWDTPQESMNN 130
           HR         RS+Y +       D    +I VN LL+ LI   +     +DT       
Sbjct: 81  HRVSCAEDTCLRSLYLEQAPAGWSDPQCRVIAVNPLLRELIRTFSELPVEYDTAGPDGRL 140

Query: 131 TTTLFWEEFYAAQRQTFHLPLPTNRRFKVFRKQLMQATFFAPDLVSLANSVGASSKTVTR 190
              L  ++   A++Q   LPLP +   +   + L         L + A   G S KT++R
Sbjct: 141 AQVLL-DQLEHAEQQQLMLPLPLDHDLRALCRHLQAHPDSPTGLTAWAQQAGVSEKTLSR 199

Query: 191 LFKAETGMSYQEWKQQWRLLKAIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTGQTPL 250
            F+ ETG+S++ W+Q+ RLL A+  L +   V  V+   G+ S SAFIA F KQ G  P 
Sbjct: 200 RFQRETGLSFRLWRQRMRLLSALPALERGERVTDVALACGYESLSAFIAAFGKQFGLPPG 259

Query: 251 SFIKIR 256
            F + R
Sbjct: 260 EFFRAR 265