Pairwise Alignments

Query, 257 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., DNA-binding transcriptional regulator NimR from Escherichia coli ECRC62

 Score =  117 bits (294), Expect = 2e-31
 Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 10  FDPDRLPACVVGIAADIGNHD--SGLHQHQKGQLLFAPQGCIRFALDDSICILPPTKAVW 67
           ++PDR     V      G  +  S +HQH+KGQL+ A  G I   +++++ ++PP  AVW
Sbjct: 9   YEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVW 68

Query: 68  IPSGTRHRAIMTNVVAYRSIYFDCHAFKCPDHITMIEVNALLKALIDKMALWSWDTPQES 127
           IP G  H   +T       ++ +  A   P     ++++ L + LI  +A  +     E 
Sbjct: 69  IPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEP 128

Query: 128 MNNTTT-LFWEEFYAAQRQTFHLPLPTNRRFKVFRKQLMQATFFAPDLVSLANSVGASSK 186
           M      + ++E     +Q  HLP+ ++ + +   + + +       L   A     S +
Sbjct: 129 MTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGSLGQWAGFFAMSER 188

Query: 187 TVTRLFKAETGMSYQEWKQQWRLLKAIELLSKETPVNQVSDWLGFSSDSAFIAFFKKQTG 246
            + RL   ETG+S+++W+QQ +L+ A++ L K   V +V+  LG+ S +AFI  FKK  G
Sbjct: 189 NLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLG 248

Query: 247 QTPLSFI 253
           QTP  +I
Sbjct: 249 QTPGRYI 255