Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., XRE family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  139 bits (351), Expect = 3e-38
 Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 6/213 (2%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQVEKHWFST--DLVILDRQLHDGDSLK 67
           R+LLIEDD  LG+G+   L   GY  +W+           S   D V+LD  L   D L+
Sbjct: 2   RLLLIEDDVALGEGIHQALAREGYTVDWLQDGSSALHALLSETFDAVVLDLGLPRMDGLE 61

Query: 68  HLPHWLMLKA-LPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQLRPLGS 126
            L       A +PV++LTA+   E RI GL AGA DY++KPF   EL AR+ A LR    
Sbjct: 62  VLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSAG 121

Query: 127 S---VLSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLNLIWGY 183
               V+ +A I +D + + V ++  PV L PKE+QLL  LL  PGRV  RD+L+ L++G+
Sbjct: 122 RARVVIEHAGICLDPSTQHVSYHGQPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYGW 181

Query: 184 QYFPTTRTVDNHILHLRQKLPQLDIETLRGVGY 216
                + T++ HI HLR+K     I T+RGVGY
Sbjct: 182 NEEAESNTLEVHIHHLRKKFTSDLIRTIRGVGY 214