Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

 Score =  135 bits (340), Expect = 6e-37
 Identities = 88/218 (40%), Positives = 129/218 (59%), Gaps = 16/218 (7%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEW----VTQSQQVEKHWFSTDLVILDRQLHDGDS 65
           R+LL+EDD  LG+G+ D L   GY  +W    V+    ++   F  DLVILD  L   D 
Sbjct: 2   RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETF--DLVILDLGLPRMDG 59

Query: 66  LKHLPHWLMLKA----LPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQL 121
           L+ L     L+A    LPV++LTA+  ++ RI GL AGA DY++KPF   EL AR+ A L
Sbjct: 60  LELLRR---LRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALL 116

Query: 122 R-PLGSS--VLSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLN 178
           R  +G +  ++ +A + +D   + V +N   V L PKE+ LL  LL  PG+V+ R+ L  
Sbjct: 117 RRSVGRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQ 176

Query: 179 LIWGYQYFPTTRTVDNHILHLRQKLPQLDIETLRGVGY 216
           L++G+   P + T++ +I HLR+KL    I T+RG+GY
Sbjct: 177 LLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGY 214