Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., two-component system response regulator PmrA from Dickeya dadantii 3937

 Score =  130 bits (327), Expect = 2e-35
 Identities = 77/215 (35%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQVEKHWFST--DLVILDRQLHDGDSLK 67
           ++L++EDDTLL +GL   + + GY C+  + +++ +    S    LV+LD  L D D L 
Sbjct: 2   KLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALITSAHYSLVVLDLGLPDEDGLT 61

Query: 68  HLPHWLMLK-ALPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQLRPLGS 126
            L  W   +   PV++LTA+  V+ R+ GL  GA DY++KPF+  E  AR+ A +R    
Sbjct: 62  LLNRWRRNRYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQG 121

Query: 127 SVLSYA---DIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLNLIWGY 183
           S  S+    +I +D+ N+ V+ +  P+ L PKEF +L  L+   G   HR+ L   ++ +
Sbjct: 122 SSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYSW 181

Query: 184 QYFPTTRTVDNHILHLRQKLPQLDIETLRGVGYRL 218
              P++ +++ HI +LRQK+ +  I+TLRG GY L
Sbjct: 182 DDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLL 216