Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., Transcriptional activator protein CopR from Alteromonas macleodii MIT1002

 Score =  129 bits (323), Expect = 6e-35
 Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 11/220 (5%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQVEKHWFSTDL--VILDRQLHDGDSLK 67
           ++LL+EDD  +   + + L   G+ C  V       +   S +L  VILD  L + D   
Sbjct: 2   KVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGFS 61

Query: 68  HLPHWLML-KALPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEA----QLR 122
            L          PV++L+AK +VE +++GL+ GA DY+ KPF+ +ELLAR+E        
Sbjct: 62  VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKE 121

Query: 123 PLGSSVLSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLNLIWG 182
               +++   D+ +D+ NR VL     ++L+ KEFQLL  LL++ G+V  R  LL  +W 
Sbjct: 122 GEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWN 181

Query: 183 YQYFPTTRTVDNHILHLRQKLPQLD----IETLRGVGYRL 218
           Y + P T  +D HI  LRQK+ +      IET+RG GYR+
Sbjct: 182 YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221