Pairwise Alignments

Query, 659 a.a., TonB-dependent siderophore receptor from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 156/741 (21%), Positives = 262/741 (35%), Gaps = 110/741 (14%)

Query: 1   MDICKKSALWLAITAAMSANAVAEQKATPEQENVVIWGTK-------VSSSSESLTTDDL 53
           M +   SA  L++ AA  A+A  E       E VV+   +       V+ S   L  + L
Sbjct: 1   MKLSPVSAAVLSVLAAGFAHAETEPS---HYEEVVVTANRIEQPLSEVAGSVAVLEGETL 57

Query: 54  SLKQADHMSDLLRDIPGVDVGGTHSVNQRINIRGLGETNLDIRLDGASQ-----HANMFH 108
             +    + D L   PGV V G     Q I IRG+    + I  DG         A++  
Sbjct: 58  EKQGKTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADIND 117

Query: 109 HIGNLTLNPDILKSADVQVGNNSVT--QSGLGGSVYFETKNAKDLLVGGEQFGARIFGGY 166
             G  T +   +K   V  G +S       +GG V  E+K  +D L   + +        
Sbjct: 118 KYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYS 177

Query: 167 ASNDNQQGSLTVYGQLSETVDAMVYGQGISRDNFEDGAGKETFGVKGDTYNVLAKVGFEP 226
             ++  QG+  +         AM +G G +    +   G+ET     D YN     G+  
Sbjct: 178 GISNRYQGNHAL---------AMRHGDGEALLTIDYWQGEETRNFNQDLYNREVD-GYNL 227

Query: 227 AVGHRFQVS-----------YDVY--RDQGDYS----PRPDMAGSANLGLSKNRLVPTHY 269
              H + ++           +D Y  R +G  S     + D+        S+ RL     
Sbjct: 228 GFSHHYWLNDALRLKTHLEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGA 287

Query: 270 DRDTITGSYELKQDKHRGKVTLYSSQT-EIDRDESVMAGVWPGNRLSRNTATN-RNVGIN 327
           D        +  + K   + T   +QT  +  ++   AG+    R  R+   N   +G  
Sbjct: 288 DYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGAT 347

Query: 328 ALFQSDYELAAHRNQVSYGM-----DY--------VDQTSKATYGSTPFMEESAVSTAVF 374
              Q +++     +Q +YGM     DY        ++ +        PF         V+
Sbjct: 348 LNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVY 407

Query: 375 AENKLYVNDVWSLTAGLRFDDFKRKAMTGTKDFDEVTWSLG-TEWDVTS--------DWT 425
            ++ L + D W+L AGLRFD  K       +       ++G +EW  ++        +W 
Sbjct: 408 GQDNLLLGD-WTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWN 466

Query: 426 LFANARSLFKGPELLETFVRYQDQ--------ARLADNIKPETGLNTQGGVRFDKTYGDH 477
            + +    F+ P   + +               +  + ++ ET  + + G ++D      
Sbjct: 467 TYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQF 526

Query: 478 FVGANFTLFKTQID------DHIRTSNSYLISNVGDMEIKGFELSTTYAYQ---AASAKL 528
           +V   +++F   ID      D+   S      N+  ++  G E+S  +      +   KL
Sbjct: 527 YVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKL 586

Query: 529 SYAHSDANDVTNGGPMLNSVGNSADMGDSIALSLGYQADSID--TLFGWTSIV-----VL 581
            Y   D  D  N       V     +  S+   L YQ +  D  +   W S +       
Sbjct: 587 GYV--DGKDGEN-----QYVRTLTPLEGSV--QLNYQRERWDAYSRLNWASAMSRVPTCT 637

Query: 582 DEDNVVAGAAKKEG---YDVHNLYAQWTPYSVPNLVLTFGVDNVFDELYVSHASRVGLAK 638
            E       A   G   +D+  L  QW       L  +F V N+ D  Y  +    G+  
Sbjct: 638 TEQGKETECATTTGWVSWDI-GLNYQWN----AQLSASFNVVNLLDREYTRYQDVAGVTP 692

Query: 639 SFVADDYEPGRSYKLSAAYQF 659
           S      EPGR + + A Y F
Sbjct: 693 SDTLYSTEPGRYFTVHAKYVF 713