Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  243 bits (620), Expect = 2e-68
 Identities = 145/350 (41%), Positives = 201/350 (57%), Gaps = 3/350 (0%)

Query: 199 MVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKS 258
           ++I   GL++ ++    I   L+  VA L D    A     L  RL  D  DEL  I   
Sbjct: 366 LLIAGIGLLVIWLVGHGIARPLKQMVAMLND---IAQGEGDLTRRLTSDRADELGAIANG 422

Query: 259 FNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGAT 318
           FN F+ K+   I +V  + ++++  +   +  A  T      Q     QVATA+HE+ AT
Sbjct: 423 FNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTAT 482

Query: 319 VSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGI 378
             ++A NA  AA  A  A   + +G ++V +    I  L  E+  A  VV +LA     I
Sbjct: 483 AQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENI 542

Query: 379 SSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVI 438
           ++ L  IR I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA ++  +TEEIQ +I
Sbjct: 543 NAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMI 602

Query: 439 NRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQS 498
            +LQ  +   V  ME  +S++D  V+ +AKA ++L  I   +  IND N Q+A+A EEQS
Sbjct: 603 QQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQS 662

Query: 499 TVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
            V EDINRNV +I Q+  E +  ADE S ASA L +L+ Q  +L+  F++
Sbjct: 663 AVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712