Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  210 bits (535), Expect = 1e-58
 Identities = 130/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%)

Query: 204 AGLIISFITSLVIITNLRSRVAYLKDR---MSSAAANLS-----LRTRLELDGNDELCDI 255
           + +I +FI  ++II  L   +  L      M+ A  +++     L  RL +  +DE   +
Sbjct: 277 SAVIATFIAVVIIIALLGMLIRILMQPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGML 336

Query: 256 GKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHEL 315
           G +FN F++++H SI EV+  ++ +  +A  V   ++ +  N   Q +RT  VA AI++L
Sbjct: 337 GNAFNRFVERIHTSIREVSSATEHVNEVALRVVSASNSSMVNSDEQANRTNSVAAAINQL 396

Query: 316 GATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQI 375
           GA   EIA NAA A+  A  A   + +G++VV      +  L + +  ++  + +L ++ 
Sbjct: 397 GAAAQEIARNAAQASHQASDARHLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKT 456

Query: 376 NGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQ 435
             I   L+ I SIS+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA R+  S +++Q
Sbjct: 457 VNIGQILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQ 516

Query: 436 QVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATE 495
           ++I  LQ  +  +V  M + +  S   V+ +  A + L  +  +I +I+  N  VATATE
Sbjct: 517 KMIEELQVGARESVSTMGESQRHSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATE 576

Query: 496 EQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
           EQ++VVE IN ++ +IN L  E         RA A L++ +++L +LVGSF +
Sbjct: 577 EQTSVVESINMDITEINTLNQEGVENLQSTLRACADLEQQAARLKQLVGSFRI 629