Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  225 bits (573), Expect = 4e-63
 Identities = 140/526 (26%), Positives = 277/526 (52%), Gaps = 7/526 (1%)

Query: 23  LLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRIPRMRVGIDMMLLQETALKDA 82
           +LF+   +LN MS ++  +  +  ++   +RA+ E T    R+RV +   LL     +  
Sbjct: 23  MLFLGVFALNQMSKIRGATEDITMSSVPSIRALDEFTQLTLRLRV-LSYRLLTNREPEVQ 81

Query: 83  KGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQARKLQARFEQMVREELEPMLQAF 142
           +  L+  E  R + I   +   +  ++S       +   +L  ++ Q + E ++ + +A 
Sbjct: 82  QKTLEAFE-VRNQQIRTAQGIYEKLIESSEERAAYDDYVRLLGQYHQ-IEERMKSLSRA- 138

Query: 143 ANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLLQQAEQQNHASVESFEAGRTKQMVII 202
             N +   +++  ++      ++     ++LD   + A   N  + + +       + ++
Sbjct: 139 --NQVEELRSLLNNELLSNSEQVNAVLTRLLDINNKMALATNKDAEDQYNMAFNMVVSLL 196

Query: 203 AAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAF 262
               +++ + + ++  ++   +A   +     A   +L   +++DG+DE   +  +    
Sbjct: 197 VIATLLTLLFAWLLTRSITLPIAQALEAAEEVAEG-NLTRPIKVDGSDEAGRLLAAMAKM 255

Query: 263 IDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEI 322
            DK+  +++ +A ++ +LA+ A  ++     +      Q +   Q ATA++E+ + V E+
Sbjct: 256 QDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEV 315

Query: 323 ASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTL 382
           A NA   ++ ++ AT  +G+G+ +V E  + I+ +  ++     ++  LA +   I   L
Sbjct: 316 ARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVL 375

Query: 383 DTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQ 442
           D IR +++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA R+  ST EI+++I  +Q
Sbjct: 376 DVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQ 435

Query: 443 TESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVE 502
             +  AV++M     +++  +  +  A  SL  IN+ I +IN++N+ +A+A EEQ+ V  
Sbjct: 436 AGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAR 495

Query: 503 DINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
           +++RN+ +I  L+ +++  A + S AS+ L RL+  L+ +VG F L
Sbjct: 496 EVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNGMVGRFRL 541