Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  202 bits (513), Expect = 4e-56
 Identities = 117/308 (37%), Positives = 167/308 (54%)

Query: 240 LRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCA 299
           L  +L++ G DE   +   FN F+  +   ++ +   S +L + A+   + AH       
Sbjct: 339 LTRQLKVQGKDETASLAGWFNQFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAG 398

Query: 300 SQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVN 359
            QR+    V+TA +E+ AT +E+A + + AA  A +      +G++ +GE    +  L  
Sbjct: 399 RQREAVELVSTAFNEMVATANEVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSE 458

Query: 360 ELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADE 419
           +L  +TQ +  L      I++ LDTIRSI+EQTNLLALNAAIEAARAG+QGRGFAVVADE
Sbjct: 459 DLQRSTQTMQQLEQDSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADE 518

Query: 420 VRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQ 479
           VR LA R+A ST EI  ++  L   +    + M+     S   VE   +A  S  +I   
Sbjct: 519 VRALARRTADSTGEIDSLLGNLARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGS 578

Query: 480 IDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQL 539
           +D I DQN Q+ATA EEQ  V E+INR++  I+         A      S  L  +S QL
Sbjct: 579 VDSIRDQNTQIATAAEEQHQVAEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQL 638

Query: 540 DKLVGSFE 547
             LVG F+
Sbjct: 639 KGLVGRFK 646



 Score = 35.0 bits (79), Expect = 9e-06
 Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 42/199 (21%)

Query: 167 KQANQILDTLLQQAEQQN----HASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRS 222
           K  N ILDT+   AEQ N    +A++E+  AG   +   + A  + +          L  
Sbjct: 475 KNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRA----------LAR 524

Query: 223 RVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELAT 282
           R A     + S   NL+ RT+          ++ +     +   H S+E + +       
Sbjct: 525 RTADSTGEIDSLLGNLARRTQ----------EVTQQMQGSLLVSHTSVERIQQARDSFDK 574

Query: 283 MASSVSQRAHMTQSNCASQRDRTVQVATA-------IHELGATVSEIASNAAMAADVAKQ 335
           +  SV            S RD+  Q+ATA         E+   +++I ++A +    A  
Sbjct: 575 IRGSVD-----------SIRDQNTQIATAAEEQHQVAEEINRHIAQIHADAQLVEGFAHS 623

Query: 336 ATLHSGEGKKVVGEVQNRI 354
           A   SG    + G+++  +
Sbjct: 624 AQTGSGRLTDISGQLKGLV 642