Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  230 bits (586), Expect = 1e-64
 Identities = 143/352 (40%), Positives = 202/352 (57%), Gaps = 6/352 (1%)

Query: 200 VIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSF 259
           V +   L+I+ +  L+  T LR       +    AA    L  RL +   DEL D+  +F
Sbjct: 211 VAVVLLLVIAAVGMLLANTILRPLHLMKANLDDIAAGEGDLTRRLAITSQDELGDLAGAF 270

Query: 260 NAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATV 319
           N F+DK+H  + ++ E + +L  + S VS +A  ++     QR  T QVATAI+++ +  
Sbjct: 271 NRFVDKIHGLVRQITEMTSQLTGLVSQVSDQAQRSEQAMERQRHETDQVATAINQMSSAA 330

Query: 320 SEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGIS 379
            E+A +A  A+  A+Q        K+VV     +I  LVN++ ++   + SL   ++ I 
Sbjct: 331 QEVARSAQGASVAAQQTDAEGQAAKRVVDGSIAQIHALVNDIRSSGVSLDSLQQDVSSIV 390

Query: 380 STLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVIN 439
           S L  IRSI+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LASR+  ST+EIQ +I+
Sbjct: 391 SVLSVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQTSTQEIQGMID 450

Query: 440 RLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQST 499
           RLQT +  AVEAM +     D     + +A  SL  +   I  IN  N Q+A+A EEQ+ 
Sbjct: 451 RLQTGTEAAVEAMRRSSDAGDGTSAQANEAGASLDTMAQLIGTINSMNAQIASAAEEQTA 510

Query: 500 VVEDINRNVEDINQLTTETSHVADEL---SRASASLQRLSSQLDKLVGSFEL 548
           V E+INR+V   +Q+      VADE    ++ S SL  L  +L +LVG F +
Sbjct: 511 VAEEINRSV---HQIAVAVDSVADETQLGAQTSRSLAELGQRLGQLVGQFRI 559