Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  141 bits (355), Expect = 4e-38
 Identities = 104/379 (27%), Positives = 169/379 (44%), Gaps = 19/379 (5%)

Query: 15  SASLSVAKLTFFIAILAAVGQATQTMYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQ 74
           S++  V++    + +L  +G     MY+P++  +       P A+QA +  + I  G  Q
Sbjct: 3   SSNAQVSRYAIVLGLLTTIGPFAIDMYLPALPAIGHALGADPHAMQASLMAFFIAVGAGQ 62

Query: 75  FVYGTLSDRIGRKPIIIAGLAIYIIGSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTL 134
            V G LSD  GR+  ++AGL ++++ S+    A      +   F+QGLG        R +
Sbjct: 63  LVAGPLSDMFGRRRPMVAGLVLFMLASIGCALAPDVGVLIALRFLQGLGACACMVTPRAV 122

Query: 135 SRDCFEGAELHKVNSLISMCLIFSPLVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMM 194
            RD + G E  ++ SL+ M    SP++AP++G ++ ES GWR+ +  ++   +A +  +M
Sbjct: 123 VRDLYTGPEAARMMSLLLMVYSVSPILAPLVGSFVAESVGWRAVFGVVAALGLAGLAMLM 182

Query: 195 TSMVETLPATARKK---EPVLRSYHYVLSDRRFQGYLICLVATFAGLAVFEAAAGVLLGG 251
             + ET PA AR        +  Y  +L DRRF         T +   V+ A +  ++  
Sbjct: 183 AFLPETRPAAARLSSNFRSAMAGYGLLLRDRRFMALAFMASFTVSAFFVYVANSPFVMSA 242

Query: 252 VLGLPATTVSLLFVLPIPGYL----AGAWLSN--VIARHWREKTAMHVGLLAILTGSLVI 305
             G+     +LLF L     L    A  WL     I R  R    +  G + +L   LV+
Sbjct: 243 HYGVSPRQYALLFALNAVSLLALSQANGWLVTRFGIRRVLRTAVMVQAGSIGLL---LVL 299

Query: 306 MLPGL--LGMTTALSLIGGATIYFLGAGILFPAATTGALSPFPYHAGTGGAILGGMQNLG 363
            L G+  L +   L +IG         G++ PA    A+      AGT  A++G M   G
Sbjct: 300 TLAGIDRLAVMVVLLMIGYGV-----NGLIVPATFVLAMEGHASLAGTASALIGTMNFAG 354

Query: 364 AGLATLFAAMFPASDQLPL 382
             L     A F     LP+
Sbjct: 355 GALMVALVAPFANGKPLPM 373