Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

 Score =  118 bits (295), Expect = 4e-31
 Identities = 94/356 (26%), Positives = 162/356 (45%), Gaps = 8/356 (2%)

Query: 40  MYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYGTLSDRIGRKPIIIAGLAIYII 99
           MY+  +  +A +   S A L    + YL     +    G ++DR GRKP+ I G A++II
Sbjct: 21  MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFII 80

Query: 100 GSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDCFEGAELHKVNSLISMCLIFSP 159
            S+    A   + FL G F+QGLG GC   ++  + RD  +     KV SL++      P
Sbjct: 81  ASVFCSLAETSTLFLAGRFLQGLGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP 140

Query: 160 LVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMVETLPAT-ARKKEPVLRSYHYV 218
           ++APVLG  +   F W+S +  +++  IAV++  +  + ET PA  A   +P  R     
Sbjct: 141 VLAPVLGHLIMLKFPWQSLFWAMAMMGIAVLMLSLFILKETRPAAPAASDKP--RENSES 198

Query: 219 LSDRRFQGYLICLVATFAGLAVFEAAAGVLLGGVLGLPATTVSLLFVLPIPGYLAGAWLS 278
           L +R F   ++    + + +  F   + VLL  ++G      + +  L     +  ++ +
Sbjct: 199 LLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFST 258

Query: 279 NVIARHWREKTAMHVGLLAILTGSLVIMLPGLLGMTTALSLIGGATIYFLGAGILFPAAT 338
                 ++ +T M    +  L   + +     +  + A+SL  G T+   G  + F  A 
Sbjct: 259 PFALGIFKPRTLMITSQVLFLAAGITL----AVSPSHAVSLF-GITLICAGFSVGFGVAM 313

Query: 339 TGALSPFPYHAGTGGAILGGMQNLGAGLATLFAAMFPASDQLPLGIIMLLMSVLAL 394
           + AL PF   AG   + LG  Q  G+ L    AA+        L  I++  S+++L
Sbjct: 314 SQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSL 369