Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., 2-module integral membrane pump; multidrug resistance (VIMSS) from Escherichia coli BW25113

 Score =  308 bits (788), Expect = 2e-88
 Identities = 154/370 (41%), Positives = 235/370 (63%), Gaps = 3/370 (0%)

Query: 23  LTFFIAILAAVGQATQTMYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYGTLSD 82
           L   + +L AVGQ  QT+Y+P+I  MA++  V   A+Q+VM  YL+ YG+SQ  YG +SD
Sbjct: 9   LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD 68

Query: 83  RIGRKPIIIAGLAIYIIGSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDCFEGA 142
           R+GR+P+I+ G++I+++ +L+A+     +  +  S +QG+G G GG M+RTL RD +E  
Sbjct: 69  RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 128

Query: 143 ELHKVNSLISMCLIFSPLVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMVETLP 202
           +L   NSL++M ++ SPL+AP++GG L   + WR+ YLFL +    V  +M   M ET P
Sbjct: 129 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 188

Query: 203 ATARKKEPVLRSYHYVLSDRRFQGYLICLVATFAGLAVFEAAAGVLLGGVLGLPATTVSL 262
             A +   +L SY  +  +  F  YL+ L+   AG+A FEA +GVL+G VLGL + TVS+
Sbjct: 189 VDAPRTR-LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI 247

Query: 263 LFVLPIPGYLAGAWLSNVIARHWREKTAMHVGLLAILTGSLVIMLPGLLGMTTALSLIGG 322
           LF+LPIP    GAW +     + R  T M   ++  L   L++ +P   G+    +L+  
Sbjct: 248 LFILPIPAAFFGAWFAG--RPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVP 305

Query: 323 ATIYFLGAGILFPAATTGALSPFPYHAGTGGAILGGMQNLGAGLATLFAAMFPASDQLPL 382
           A ++F GAG+LFP AT+GA+ PFP+ AGT GA++GG+QN+G+G+    +AM P + Q  L
Sbjct: 306 AALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 365

Query: 383 GIIMLLMSVL 392
           G++M LM +L
Sbjct: 366 GLLMTLMGLL 375