Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  359 bits (921), Expect = e-103
 Identities = 202/456 (44%), Positives = 283/456 (62%), Gaps = 28/456 (6%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+SLGL+ PI++A+ E  + TP+PIQ +AIP VLAG+D++  AQTGTGKTA F LPIL+ 
Sbjct: 28  FSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFALPILDR 87

Query: 63  LAKGPK-VRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
           L + P+      VRAL+L+PTREL+ QI DN   +GRH  +   +  GGV +  Q++ + 
Sbjct: 88  LVRHPRRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHARISVTLAIGGVPMGRQIRALA 147

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           +G D+LVATPGRLMDL   +AVK DQ+E+LVLDEAD+MLDMGF+  I  I++ LP KR +
Sbjct: 148 RGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 207

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
           L FSAT    I ELA G++++PV ++V+P   TA  VEQ +   D   K  +L +++   
Sbjct: 208 LFFSATMPPAIAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVDKPNKGQLLAEVLSTE 267

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
              + LVF RTKHGA+++   L + G+ A AIHGNKSQ  R R L  F+ G++R L+ATD
Sbjct: 268 EIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGKIRTLIATD 327

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           IAARGID+  +  V+N++LP + E YVHRIGRT RAG  G AIS     E   L +IERL
Sbjct: 328 IAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAYLKSIERL 387

Query: 362 TQALLPRVNLAGFEPTNQLPES---KLDTR---------------------PLKPKKPKK 397
            +  +P  +  G      +P++   +L+ R                     P + + P +
Sbjct: 388 IKLQIPATDRRGAGMRFAIPDAPPIELEERDETAERNDFIGGRGGRPGQRGPQRSRGP-R 446

Query: 398 PKKVEGAGENKGSVAENKPKAGHRGQ-PTGQARTAK 432
           P+  EG G  +G  AE + +   RG+ P G+ R A+
Sbjct: 447 PEGREG-GRGQGQRAEGREQREPRGERPAGEGRPAR 481