Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  330 bits (847), Expect = 5e-95
 Identities = 195/462 (42%), Positives = 279/462 (60%), Gaps = 15/462 (3%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+ LGLS  +L A+ + GY TP+PIQ QAIP VLA +DV+  AQTGTGKTA FTLP+L
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
            LL +G + RA   R LIL PTRELAAQ+++N   YG++  L  A++ GGV    Q  ++
Sbjct: 61  TLLEQG-RARARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFGDQDTKL 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G D+L+ATPGRL+D   +  +    +E+LV+DEADRMLDMGFI DI +I KL+P  RQ
Sbjct: 120 VRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPA--DVKKKPDMLVKLV 238
            L FSAT   EI+ L    +++PV + VS   STA TV Q +  +  +  +K ++L +L+
Sbjct: 180 TLFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKREVLRELI 239

Query: 239 KE-GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297
           +   N Q  ++F   K     L   L + G  A A+HG+  Q AR +AL +F+ GE  +L
Sbjct: 240 RSCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEATLL 299

Query: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
           VA+D+AARG+DIP +  V N+++P  +EDYVHRIGRTGRAG  G A ++V+ ++A  L A
Sbjct: 300 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKSLSA 359

Query: 358 IERLTQALLP--RVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGS---VA 412
           IE+L    +P     L    P ++           K +  K+P++  G  E +G      
Sbjct: 360 IEKLIGNPIPWHGAPLGDAPPASERRGRDDGRLRGKRRMDKEPREGRGDREGRGEREPRR 419

Query: 413 ENKPKA-----GHRGQPTGQARTAKKGGTHSEPKKPTKRPVR 449
           E +P+A     G R +   +A  A++      P++ T+RP R
Sbjct: 420 EREPRAEGAERGERPERQPRAERAERPERADRPER-TERPER 460