Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  449 bits (1154), Expect = e-130
 Identities = 245/463 (52%), Positives = 309/463 (66%), Gaps = 16/463 (3%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLS  +++AIE  GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ELLA------KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114
           E L       K  +    Q R L+LTPTRELAAQ+ D+  LY R L   SA +FGGV +N
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174
           PQ+Q M +G D+LVA PGRL+DL  Q +V    +EILVLDEADRMLDMGF+ D+ K+L  
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234
           LP KRQNLLFSATFS +I  LA  L++NP  I V+P N+T   +EQ ++      K  +L
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
             L+  G W+QVLVF RTKHGANRLA YL++ GLTA AIHGNKSQ ART+ALADFKAG V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354
           RILVATDIAARG+DI QLP VVNFELP + EDYVHRIGRTGRAG  G+AISLV+  E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LFAIERLTQALLPRVNLAGFEPT---NQLPESKLDTRPLKPKKPKKPK-------KVEGA 404
           L +IER+T+  +   +L GF+ +    + PE++       P+ P+ PK          G 
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG 420

Query: 405 GENKGSVAENKPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRP 447
             +KG     +  A  RG+   + +  ++G    E ++P++ P
Sbjct: 421 RRDKGKDKGKEKSASGRGERPAREQKPREGTPAREQRQPSQPP 463