Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  456 bits (1172), Expect = e-133
 Identities = 239/425 (56%), Positives = 309/425 (72%), Gaps = 9/425 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +LGL  P+L+A+E  GY TP+P+Q QAIPAVLAG+D+MAAAQTGTGKTAGF +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  ELLA-KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
           +LL  +GPKV AN  RALIL PTRELA Q+  +V  Y ++LPL +  V+GGV INPQM +
Sbjct: 61  QLLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMK 120

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           + KG DILVATPGRL+DL+ QNA+K +QL+ LVLDEADRMLD+GF  ++  I ++LP+KR
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           Q LLFSATFS +IR LA  ++N+P+ I VSP N  A TV+Q + P D K+KP++ V L++
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMR 240

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           +G W+QVLVF +T++G + L   L   G+ A  IHG+K Q  R RAL  FK+ EV+ILVA
Sbjct: 241 KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVA 300

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TD+AARG+DI  LP VVNF+LP +AEDY+HRIGRTGRAG  G+AISLV A E   L AIE
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE 360

Query: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPL-KPKKPKKPKKVEGAGE-------NKGSV 411
            LT+  L R     FEP +++P++    + + KPKKPKKPK   G G+       + G V
Sbjct: 361 MLTRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPKKPKKPKSSGGGGKRNLGKWVDSGEV 420

Query: 412 AENKP 416
           A  +P
Sbjct: 421 APAEP 425