Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  418 bits (1074), Expect = e-121
 Identities = 212/380 (55%), Positives = 276/380 (72%), Gaps = 4/380 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  L L+  ILKA+ E GY+TP+PIQ QAIPAVL G D++  AQTGTGKTA FTLP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  ELLAKGP----KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQ 116
             L+       K     +RAL+LTPTRELAAQ++++V  YG++L L S V+FGGV +NPQ
Sbjct: 61  HKLSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
           + ++ KG DILVATPGRL+DL  Q  +   Q+++L+LDEADRMLDMGFI D+ KIL L+P
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236
           +++Q+LLFSATFS +IR+LA  L+ NP  I V+P N+T + + Q I+P    KK  +L  
Sbjct: 181 KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296
           ++ E  W QVLVF RTK GAN +A +L + G+ A A+HGNKSQ ART+ALA FK+G++R 
Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300

Query: 297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELF 356
           LVATDIAARGIDI +LP VVN+E+P ++EDYVHRIGRTGRAG  G+A+S V   E   + 
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ 360

Query: 357 AIERLTQALLPRVNLAGFEP 376
            IER T+  +P   + GF P
Sbjct: 361 EIERFTKQTIPVQIVEGFGP 380