Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  358 bits (918), Expect = e-103
 Identities = 200/426 (46%), Positives = 264/426 (61%), Gaps = 7/426 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGL+  ++ A  E GY  P+ IQ  AIPA+L G+DV  +AQTG+GKTA F+LP+L
Sbjct: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60

Query: 61  ELL-AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP--LKSAVVFGGVKINPQM 117
           + L A+ P     +VRAL+L PTRELAAQ+ + +    +HLP  LK  V FGGV INPQM
Sbjct: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120

Query: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
             +  GADI+VATPGRL+DL + NA++ D +  LVLDEADR+ D+GF  ++ +IL LLP 
Sbjct: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180

Query: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKL 237
           +RQNLLFSATF   I+ LA   + +P  I V     T   + Q +   D  ++  +L  L
Sbjct: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240

Query: 238 VK--EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
           +K  EG W +VLVF+ T+H A  +A  L + G+ A   HG+ +QG RT  LA FK     
Sbjct: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300

Query: 296 ILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPEL 355
           +++ATD+AARGIDI QLP V+N++LP+   DY+HRIGRTGRAGE G AIS VSA      
Sbjct: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360

Query: 356 FAIERLTQALLPRVNLAGFEPTNQLPE--SKLDTRPLKPKKPKKPKKVEGAGENKGSVAE 413
             IE+     LPR  + GFEPT   P       T  +K K+P K  K+  A     +  E
Sbjct: 361 RLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSKKDKLRAAAAKAAAREE 420

Query: 414 NKPKAG 419
              K+G
Sbjct: 421 VAGKSG 426