Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score =  342 bits (877), Expect = 2e-98
 Identities = 184/364 (50%), Positives = 240/364 (65%), Gaps = 5/364 (1%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F++L L+ P+ +A+ E GY T +PIQ QAIP VL+G+DVM AAQTGTGKTA F+LP+L+ 
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 63  LAKGPKVRANQ----VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           + K      +     VRAL+L PTRELA Q+   + LY ++  L+S VVFGG+ + PQ  
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTNLRSTVVFGGIDMKPQTL 124

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
            + KG ++LVATPGRL+D         +Q+E +VLDEADRMLD+GF+ D+ +IL  LP++
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           R  LLFSATFS EI+ LA   + NP+ I V+  N TA TVEQ  Y      K   L ++V
Sbjct: 185 RTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRALKQIV 244

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
           ++    Q  VF+ +K G  RLA  L   GL   A+HG+KSQ  R +ALA FKAGEV +LV
Sbjct: 245 RQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLV 304

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA- 357
            TD+AARG+DI  +P V NF++P  AEDYVHRIGRTGRAG  G A+S  S      L A 
Sbjct: 305 CTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLVAD 364

Query: 358 IERL 361
           IE+L
Sbjct: 365 IEKL 368