Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  296 bits (757), Expect = 1e-84
 Identities = 176/418 (42%), Positives = 246/418 (58%), Gaps = 14/418 (3%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+SL LSA +++A+  K    PS IQ   IPA+L GKDV A A TG+GKT  + LP+L
Sbjct: 23  MSFSSLALSADLIQALP-KAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           E L   P     + +AL+L PTRELA Q+ + +   G  L L +  + GGV    Q   +
Sbjct: 82  ERLKTSP-----EQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +  +ILVAT GRL DL  Q+ ++ +++  LVLDEADR+LDMGF   +  +       RQ
Sbjct: 137 AENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            ++ SATFS +++  A+ L+  P ++S +P NS  + V++ +Y  +   K   LV L+K+
Sbjct: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
             W QVLVF+  K  A+ L   LN+ G+ A  +HG+KSQ  R  ALA+FK G  ++L+AT
Sbjct: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+ ARGI I  LP V+NFELP  AE YVHR+GRT RAG+ G A+SLV   E   L A   
Sbjct: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           LTQ  LP  NL GF  T+Q           + K+  + K+     +NK SV + + K+
Sbjct: 376 LTQRELPVQNLEGFPVTDQPSTG-------ESKRAPRDKQANRRTQNKKSVKQFQGKS 426