Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  385 bits (990), Expect = e-111
 Identities = 199/403 (49%), Positives = 276/403 (68%), Gaps = 3/403 (0%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ LGL + +L  + E G   P+PIQ QAIP VL GKDV+A AQTGTGKTA F LP+++ 
Sbjct: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 63  LAKGP---KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
             + P   +  + ++RAL+L PTRELA Q+ D++  Y +   LK   V+GG  +  Q+  
Sbjct: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           +  G DIL+ATPGRL+D  +  ++   ++E+LVLDEADRMLDMGF+ D+ ++L+ L   R
Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           Q L FSATF ++I+ +A  ++ +P+E+ V+P+NSTA TV+Q +YP D K+K ++L  L+ 
Sbjct: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
             NWQQVLVF +T+ G++ LA  L   G+ A +I+G+KSQGAR +AL DFKAG+VR L+A
Sbjct: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TD+AARG+DI QL QVVN+++P  AEDYVHRIGRTGRAG  G A+SL+S  E P+L AIE
Sbjct: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367

Query: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVE 402
           RL    LP+  L GFEP+  + E     R       K+  K +
Sbjct: 368 RLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQ 410