Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  352 bits (903), Expect = e-101
 Identities = 208/456 (45%), Positives = 269/456 (58%), Gaps = 5/456 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  LGLS PI+KA+  K Y  P+PIQ +AIP +L G+D+   AQTGTGKTA F LP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 61  ELLAKGPK-VRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
           +  A+ PK       R L+L+PTRELAAQI  +   YGR L L    VFGGV +N Q++ 
Sbjct: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           +  G DI+VATPGRL+DL +Q A      EI VLDEAD+M+DMGFI  + +I KLLP  R
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           QNL FSAT   EI  LA   +N+PV++SV+P ++TA  V Q +   +  +K  +L  ++K
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
                + L+F RTKHGA+R+  +L   G+ A AIHGNKSQ  RT AL  F+ G  ++LVA
Sbjct: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TDIAARGID+  +  V+NFE+P + E YVHRIGRT RAG  G AIS V+  E P L AIE
Sbjct: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360

Query: 360 RLTQALLPRVNLAG--FEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGE-NKGSVAE-NK 415
           R T+     V L     E    LP+     R       ++ K+ EG     +G  A+   
Sbjct: 361 RATKVKPEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQRGA 420

Query: 416 PKAGHRGQPTGQARTAKKGGTHSEPKKPTKRPVRNG 451
           P    RG+   +   A +G       K   R  R G
Sbjct: 421 PDKARRGEGGHRGEGAHRGEGDGAGAKKNFRRRRGG 456