Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  310 bits (793), Expect = 8e-89
 Identities = 183/455 (40%), Positives = 258/455 (56%), Gaps = 18/455 (3%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  LGLS  +LKA+ E GY+TP+PIQ QAIP VL  KD++  AQTGTGKTA F LP++
Sbjct: 1   MTFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           ++LA G + RA   R+LIL PTRELAAQ+ +N   YG++  L  A++ GGV++  Q++ +
Sbjct: 61  DILAHG-RARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKAL 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            KG D+L+ATPGRLMDL+ +  +  +   +LV+DEADRMLDMGFI DI +I   LP +RQ
Sbjct: 120 EKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQ 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            LLFSAT    I++LA   ++NP  I V+   + +  + Q +   D +KK + L  +++ 
Sbjct: 180 TLLFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEA 239

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            + Q  ++F   K     L   L   G  +  IHG+  Q +R   L  F+ G V ILVA+
Sbjct: 240 EDVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVAS 299

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI  +  V NF+ P   +DYVHRIGRTGRAG  G A + V+A +A  +  I++
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQK 359

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKP--KA 418
           L    +  V      P    P  +    P K  + ++  +  G     G  A  KP  K 
Sbjct: 360 LIGTKIDYVE----TPVAAAPAPRAKEEPRKADREERDNERSG-----GREARRKPERKD 410

Query: 419 GHRGQPTGQAR------TAKKGGTHSEPKKPTKRP 447
             R       R       A +   HS  ++P   P
Sbjct: 411 DRRSDKRDDRRDDRRDAPAARSAPHSRRQEPDDGP 445