Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  455 bits (1171), Expect = e-132
 Identities = 250/461 (54%), Positives = 310/461 (67%), Gaps = 14/461 (3%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLS  +++AIE  GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ELLA------KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114
           E L       K  +    Q R L+LTPTRELAAQ+ D+  +Y R LPL SA +FGGV +N
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174
           PQ+Q + KG D+LVA PGRL+DL  Q  V    +EILVLDEADRMLDMGFI D+ K+L  
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234
           LP KRQNLLFSATFS +I +LA  L++NP  I V+P N+T   +EQ +Y      K  +L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
             L+  G W+QVLVF RTKHGANRLA YL +QGLTAAAIHGNKSQ ART+ALADFKA  V
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354
           R+LVATDIAARG+DI QLP VVNFELP + EDYVHRIGRTGRAG  G+AISLV+  E   
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LFAIERLTQALLPRVNLAGFEPTN---QLPESKLDTRPLKPKKPKKPKKVEGAG---ENK 408
           L +IER+T+  +   +L GF+ +    + PE++   RP    +  + ++  G G    N 
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEAR--ERPQNNGRGGRNQQARGEGGKDTNG 418

Query: 409 GSVAENKPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRPVR 449
           G   + K K   R Q   +    +K G   +P+KP  +  R
Sbjct: 419 GRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSR 459



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 389 PLKPKKPKKPKKVEGAGENKGSVAENKPKAGHRGQPTGQARTAKKGGTHSEPK 441
           P + K   + ++  GAG+ +G     +  AG +GQ     +    GG    P+
Sbjct: 497 PYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPR 549