Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., RNA helicase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  347 bits (890), Expect = e-100
 Identities = 189/381 (49%), Positives = 257/381 (67%), Gaps = 8/381 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+ LGLSAP+LKAIE + Y  P PIQ QAIPA+L GKDV+  AQTG+GKTA F LP+L
Sbjct: 1   MPFSKLGLSAPLLKAIEAQLYEQPYPIQQQAIPAILQGKDVLGIAQTGSGKTASFVLPML 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP--LKSAVVFGGVKINPQMQ 118
           E L +    R   V ALIL PTRELA Q+ +    +G  LP  +K+  V+GGV INPQM 
Sbjct: 61  EKLQRTAPSRNRFVEALILVPTRELAVQVNEVFKTFGAALPRRVKTLAVYGGVSINPQML 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++  G D+LVATPGRL+DL    AV   +++ LVLDEAD+ML++GF  ++ +IL LLP K
Sbjct: 121 QL-SGTDVLVATPGRLLDLIESRAVHLSEVKTLVLDEADKMLNLGFKEEMDRILALLPPK 179

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQN+LFSAT   +++ + + L+++PV I+V   +++   + Q  Y    +KK   L  L+
Sbjct: 180 RQNILFSATLGGDVQAVQETLLHSPVTIAVETESTSPEQIAQVAYQVAPEKKGPFLRYLI 239

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
           K  + QQVLVF+     A+ L   LN+ G+ AAA+H  KSQGART AL  FKAG++R+LV
Sbjct: 240 KHHSLQQVLVFVSATRTADNLVDKLNKNGIEAAAMHSKKSQGARTDALTKFKAGKLRVLV 299

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATD+A+RGIDI  LP V+N++LP+  +DYVHRIGRTGRAG  G+AISL++  +A     I
Sbjct: 300 ATDLASRGIDIQLLPHVINYDLPRSPKDYVHRIGRTGRAGATGEAISLITPEDAHHFKII 359

Query: 359 ERLTQALLP-----RVNLAGF 374
           ++     +P      ++L GF
Sbjct: 360 QKKMGKQVPVEATEDIDLKGF 380