Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  357 bits (917), Expect = e-103
 Identities = 193/411 (46%), Positives = 267/411 (64%), Gaps = 3/411 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M FT+LGL+  + +A  E G+ TP+PIQ +AIPAVLAG D++A AQTG+GKTA + LP+L
Sbjct: 1   MPFTALGLAPALAQAAAELGFTTPTPIQREAIPAVLAGHDLLATAQTGSGKTAAYALPLL 60

Query: 61  ELLAKGPKVRA-NQVRALILTPTRELAAQIQDNVMLYGRHLPL--KSAVVFGGVKINPQM 117
           + L++G    +  +VRAL++ PTRELAAQ+ + V    +HLP   K AVVFGGV INPQM
Sbjct: 61  QRLSQGAAPHSPRRVRALVVVPTRELAAQVGEAVRALAQHLPRQPKVAVVFGGVSINPQM 120

Query: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
             +  GAD++VATPGRL+DL   NA++   +E+LVLDEADR+LD+GF  ++ ++L LLP 
Sbjct: 121 MALRGGADVVVATPGRLLDLVEHNALRLSAVELLVLDEADRLLDLGFADELARVLALLPA 180

Query: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKL 237
           +RQNL FSATF   ++ LA  L++ P  I V  A + +  + Q  +  D  ++  +L +L
Sbjct: 181 QRQNLFFSATFPVAVQALADALLHQPQRIDVPAAPTDSAVILQQAFLVDSTRRTQLLRQL 240

Query: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297
           +++  WQ+VLVF+ T++ A R+A  L++  L A + HG  SQGAR +AL +FK     ++
Sbjct: 241 IQDQGWQRVLVFVATQYAAERVAAKLHQGDLYATSFHGGLSQGARQQALGEFKDKRWDVV 300

Query: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
           V TD+AARGIDI QLP VVN++LP+   DYVHRIGRTGRAG  G A+S VS         
Sbjct: 301 VTTDLAARGIDIEQLPVVVNYDLPRSTVDYVHRIGRTGRAGADGLAVSFVSPATEAHWRL 360

Query: 358 IERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENK 408
           IE+     LP     GFEPT   P        +K K+P K  K+  A   +
Sbjct: 361 IEKRMGLSLPLEVRPGFEPTEAAPPPAPGGGGIKGKRPSKKDKLRAAAAGR 411