Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  431 bits (1109), Expect = e-125
 Identities = 235/469 (50%), Positives = 312/469 (66%), Gaps = 35/469 (7%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  L L+  I++A+ E GY TP+PIQ++AIPAVLAG+D++  AQTGTGKTA FTLP+L
Sbjct: 15  MTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML 74

Query: 61  ELLAKGPKVRAN----QVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQ 116
             LA   + ++      +RAL+LTPTRELAAQ++++V +YG+HL L S VVFGGV +NPQ
Sbjct: 75  HRLANSERAKSRFGGVGIRALVLTPTRELAAQVEESVRVYGKHLSLTSTVVFGGVGMNPQ 134

Query: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
           +  M +G DILVATPGRL+DL  Q  +    +++LVLDEADRMLDMGFI D+ KIL L+P
Sbjct: 135 INAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILALVP 194

Query: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236
           +++Q+LLFSATFS EIR+LA  L+ +P+ I V+P N+T + + Q I+P    KK  +LV 
Sbjct: 195 KEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKALLVH 254

Query: 237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296
           ++ + NW QVLVF RTK GAN +A YL + G+ A A+HGNKSQGART+ALA FK+GE+R 
Sbjct: 255 IINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGEIRA 314

Query: 297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELF 356
           LVATDIAARGIDI +LP VVN+E+P I+EDYVHRIGRTGRAG  G+A++LVS  E   + 
Sbjct: 315 LVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGNSGEAVNLVSLDEEGFMM 374

Query: 357 AIERLTQALLP---------------------RVNL---AGFEPTNQLPESKLD---TRP 389
            IER T+  +P                     R  +   AG  P+ ++  +      T  
Sbjct: 375 EIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSREVMAAAAKAARTEM 434

Query: 390 LKPKKPKKPKKVEGAGENKGSVAENKPKAGHRGQ---PTGQARTAKKGG 435
           L+  + KK  + +G G   G     +P AG   Q   P G+ R    GG
Sbjct: 435 LQRVREKKANEPQGRGNGGGGGQRQRP-AGDGSQADGPRGEGRRGNGGG 482