Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  365 bits (937), Expect = e-105
 Identities = 209/455 (45%), Positives = 276/455 (60%), Gaps = 17/455 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ LGL+ P+LKA+E +GY TP+PIQ Q+IP +L G DV+  AQTGTGKTA F LP+L+ 
Sbjct: 5   FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64

Query: 63  LAKGPK-VRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
           L +  K       R L+LTPTRELA Q+  +   YG H  L+ A+VFGGV + PQ++ M 
Sbjct: 65  LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
            G D+LVATPGRL+DL  Q A++ D +E LVLDEADRMLDMGFI+ I KI+ L+P++RQ 
Sbjct: 125 GGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQT 184

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
           +LFSAT    I  LA  +++ PV + V+P +ST   ++Q +   D + K  +L  ++   
Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILAGK 244

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
           +  + LVF RTKHGANR+   L + G+ A AIHGNKSQGAR +ALADF+ G ++ LVATD
Sbjct: 245 DVGRALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALVATD 304

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           IAARGID+  +  V+NFELP   E YVHRIGRT RAG  G A+SL    E   L  IE+ 
Sbjct: 305 IAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDEVAYLRDIEKT 364

Query: 362 TQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGHR 421
            +  +P      +E             P  P+  K P+   G G       +  P+    
Sbjct: 365 IRQAIP----VDYEQPYHAAHIATRGLPGGPRATKPPQPHRGGG-------KGHPQQSRG 413

Query: 422 GQPTGQ--ARTAK--KGGTHSEPKKPTK-RPVRNG 451
           G P G+  A  AK   G  H+   KP   RP   G
Sbjct: 414 GNPHGEHGAHPAKGRDGAKHTHAGKPASGRPAAAG 448