Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  333 bits (854), Expect = 8e-96
 Identities = 189/456 (41%), Positives = 267/456 (58%), Gaps = 19/456 (4%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LGL   ILKA+ E GY  P+PIQ QAIP VL G+DV+  AQTGTGKTA FTLP++E+
Sbjct: 20  FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 79

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           LA G + +A   R+LIL PTRELAAQ+ +N   YG++ PLK A++ GG  ++ Q+  + +
Sbjct: 80  LAAG-RAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDR 138

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G D+L+ATPGRL+D++ +  +  + +++LV+DEADRMLDMGFI D+ KI+ LLP+ RQ L
Sbjct: 139 GVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTL 198

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGN 242
            FSAT   EIR LA   + NP E+ VS   S A TV Q +   +   K + L  L++   
Sbjct: 199 FFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRHLIRIEE 258

Query: 243 WQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDI 302
            +   +F   K   + L   L + G     +HG+ +Q AR   L  FK GE R++V +D+
Sbjct: 259 VKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVCSDV 318

Query: 303 AARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERLT 362
           AARGIDI  +  V NF++P  AEDYVHRIGRTGRAG  G A ++ S  +   + AIE + 
Sbjct: 319 AARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVGAIEAMI 378

Query: 363 QALLPRVNLAGFEPTNQLPESKLDTRPLK-------PKKPKKPKKVEGAGENKGSVAENK 415
              +PR+++ G      +P   LD    K       PK  K+P +  G  +      E +
Sbjct: 379 GTTIPRISVEG------VPALDLDMTARKGRGGRGAPKDAKRPAR--GKDDEAKPRRERR 430

Query: 416 PKAGHRGQPTGQARTAKKGGTHSEPKKP-TKRPVRN 450
           P+      P  +A   +        ++P  +RP R+
Sbjct: 431 PRRDE--APVAEAAPVEAAAPEEVIERPREERPERS 464