Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  472 bits (1214), Expect = e-137
 Identities = 257/460 (55%), Positives = 328/460 (71%), Gaps = 22/460 (4%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGL+  IL+AI E+GY  P+PIQ QAIPAVL G+D+MA+AQTGTGKTAGFTLP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  E-LLAKGPKVRANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           + L+   P  +  + VRALILTPTRELAAQI +NV  Y ++L ++S VVFGGV INPQM 
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++  G D+LVATPGRL+DL +QNAVK DQ+EILVLDEADRMLDMGFI DI ++L  LP K
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQNLLFSATFS +I+ LA+ L+ NP+EI V+  N+ +  V Q ++  D K+K ++L +++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
            +GNWQQVLVF RTKHGAN LA  LN+ G+ +AAIHGNKSQGARTRALADFK+G++R+LV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATDIAARG+DI +LP VVN+ELP + EDYVHRIGRTGRA   G+A+SLV   E   L  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           E+L +  +PR+   G+EP    P  K +     P +  + ++  G G  +G   +N+  A
Sbjct: 361 EKLLKKEIPRITTPGYEPD---PSIKAE-----PIQNGRQQRGGGGGRGRG---QNQGGA 409

Query: 419 GHRGQPTGQARTAKK---------GGTHSEPKKPTKRPVR 449
           G   QP  Q   A K         G T  +  +P +RP R
Sbjct: 410 GRSQQPRRQDSGAAKAKPKPRTGEGKTAGDKARPPRRPRR 449