Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  473 bits (1217), Expect = e-138
 Identities = 249/445 (55%), Positives = 325/445 (73%), Gaps = 10/445 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLS  IL+A+ E+GY  P+PIQ QAIPAVL G+D+MA+AQTGTGKTAGFTLP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  E-LLAKGPKVRANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           + L+ + P  +  + VRALILTPTRELAAQI +NV  Y ++L ++S VVFGGV INPQM 
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++  G D+LVATPGRL+DL +QNAVK DQ+EILVLDEADRMLDMGFI DI ++L  LP K
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQNLLFSATFS +I+ LA+ L++NP+EI V+  N+ +  V Q ++  D K+K ++L  ++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
            +GNWQQVLVF RTKHGAN LA  LN+ G+ +AAIHGNKSQGARTRALADFK+G++R+LV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATDIAARG+DI +LP VVN+ELP + EDYVHRIGRTGRA   G+A+SLV   E   L  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           E+L +  +PR+ + G+E     P+  +   P++  + ++     G G  +G   + +P+ 
Sbjct: 361 EKLLKKEIPRIAIPGYE-----PDPSIKAEPIQNGRQQRGGGGRGQGGGRG---QQQPRR 412

Query: 419 GHRGQPTGQARTAKKGGTHSEPKKP 443
           G  G  +  A+ A+K        KP
Sbjct: 413 GEGGAKSASAKPAEKPSRRLGDAKP 437