Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., ATP-dependent RNA helicase CsdA (EC 5.99.1.-) from Kangiella aquimarina DSM 16071

 Score =  289 bits (739), Expect = 2e-82
 Identities = 156/389 (40%), Positives = 237/389 (60%), Gaps = 5/389 (1%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LGLS  +LK+I++ GY  PSPIQ  +IP +++GKD++  AQTGTGKTA F LP+L  
Sbjct: 10  FDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMSGKDIIGQAQTGTGKTAAFALPMLSK 69

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAV-VFGGVKINPQMQRMC 121
           L      + +  + L+L PTRELA Q+ +    Y +++P  + + ++GG + + Q++++ 
Sbjct: 70  L----DAKDSNTQLLVLAPTRELAIQVAEACQSYAKNMPGMNVLPIYGGQRYDTQLRQLK 125

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           +GA I+V TPGR+MD   +  +  D L+ LVLDEAD ML MGFI D+  +L   P+ RQ 
Sbjct: 126 RGAQIVVGTPGRVMDHIRRGTLNLDNLKALVLDEADEMLRMGFIEDVEWVLGHTPDTRQI 185

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
            LFSAT   EI+++A+  +N P  I +    STA T++Q  +      K D L ++++  
Sbjct: 186 ALFSATMPKEIKKVAEKYLNEPEHIKIQSKTSTATTIDQRYWLVSGLHKLDALTRVLETE 245

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
            +  +++F+RTK     LA  L  +G  A A++G+ +Q AR R +   K G+  IL+ATD
Sbjct: 246 EFDGMIIFVRTKIATIELADKLTARGFRAEALNGDIAQNARERIVEKLKKGQSDILIATD 305

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           +AARG+D+ ++  VVN+++P   E YVHRIGRTGRAG  G AI  V+  E   L AIER 
Sbjct: 306 VAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGHAILFVAHRERRMLKAIERA 365

Query: 362 TQALLPRVNLAGFEPTNQLPESKLDTRPL 390
           T   +  + +   E  N+   S+ + + L
Sbjct: 366 TNQPITEMQMPSIENINEQRMSRFERKVL 394